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If you’re craving something that combines the cozy charm of a classic apple crisp with the fun, handheld ease of a cookie, you’ll adore these Apple Crisp Cookie Cups. Imagine tender, cinnamon-spiced apple filling nestled inside a buttery sugar cookie cup that’s just the right balance of chewy and crisp. These delightful treats are not only delicious but also a total crowd-pleaser that’s perfect for everything from family dessert nights to holiday gatherings. Once you try these Apple Crisp Cookie Cups, they’ll quickly become your go-to for a sweet snack that captures all the flavors of fall in a perfectly portable bite.

Ingredients You’ll Need
These ingredients may seem simple, but each one plays a crucial role in delivering the comforting flavors and textures that make Apple Crisp Cookie Cups so irresistible. From the tartness of Granny Smith apples to the warmth of cinnamon and the rich sweetness of sugar cookie dough, every element shines through perfectly.
- 5 medium apples: Granny Smith apples are ideal for their tart flavor and sturdy texture, which holds up well when cooked.
- 1 teaspoon cinnamon: Adds the signature warmth that Apple Crisp Cookie Cups are known for.
- ¼ cup white granulated sugar: Balances the tartness of the apples and helps thicken the filling.
- ¼ cup brown sugar: Brings a subtle molasses sweetness and helps with caramelization.
- ¼ teaspoon nutmeg: A pinch of this spice deepens the flavor profile with earthy notes.
- 1 tablespoon cornstarch: Essential for thickening the apple mixture to just the right consistency.
- 2 tablespoons butter: Adds richness to the cooked apples and ensures a luscious finish.
- ½ cup water: Helps cook down the apples and create a deliciously syrupy glaze.
- 16.5 ounces sugar cookie dough: Using refrigerated dough from the store makes the process super simple while delivering a buttery, soft cookie base.
How to Make Apple Crisp Cookie Cups
Step 1: Prepare the Apple Mixture
Start by peeling and dicing your apples into small, bite-sized pieces—about a quarter inch works best to create a tender but textured filling. Toss these apple pieces in a large bowl with cinnamon, nutmeg, cornstarch, brown sugar, and white sugar. Mixing everything thoroughly ensures the apples are evenly coated with spices and sugars, which means every bite of your Apple Crisp Cookie Cups will be bursting with flavor.
Step 2: Cook the Apples
Warm a skillet over medium heat and melt the butter for a rich base to your filling. Add your apple mixture and cook for 2 to 3 minutes until the apples begin to soften, releasing their natural juices and aromas. This step is where your kitchen starts to smell like autumn magic.
Step 3: Simmer and Caramelize
Pour in the half cup of water and continue cooking the apples for about 10 minutes, stirring frequently. You’ll notice the mixture thickens and the apples slowly caramelize, developing a lovely glossy coating that makes the filling both delicious and visually appealing. Remove from heat and set aside to cool slightly while you prepare your cookie cups.
Step 4: Prepare the Cookie Cups
Preheat your oven to 350°F and grease a muffin tin well with butter or baking spray to prevent sticking. Scoop about 1 ½ tablespoons of your sugar cookie dough into each muffin cup. Press the dough evenly along the bottom and up the sides, going about three-quarters of the way up the tin. The dough will be thin at this point but don’t worry—it will bake up perfectly crisp yet tender, forming a sturdy cup for the apple filling.
Step 5: Bake the Cookie Cups
Bake the cookie cups for 11 to 12 minutes, watching for the edges to turn a delicate golden brown. Once baked, let them cool in the pan for 10 minutes before carefully loosening each cup with a spatula or butter knife and transferring them to a wire rack to cool completely. This cooling step helps them firm up so they hold the filling beautifully.
Step 6: Assemble and Enjoy
When your cookie cups are cool, generously spoon the luscious apple filling into each cup center. These Apple Crisp Cookie Cups can be enjoyed cold as a refreshing treat, or warm if you prefer the filling a bit gooier. Either way, they are pure comfort in every bite.
How to Serve Apple Crisp Cookie Cups

Garnishes
A scoop of vanilla ice cream or a dollop of whipped cream on top adds an indulgent creaminess that pairs wonderfully with the spiced apple filling. For an extra touch, sprinkle a bit of finely chopped toasted pecans or a pinch of extra cinnamon to elevate the presentation and texture.
Side Dishes
These cookie cups are great as a dessert after a cozy meal but also shine alongside a warm cup of chai tea or coffee for an afternoon snack. A simple green salad or light soup could precede them nicely if serving at a fall-inspired gathering.
Creative Ways to Present
For parties, consider serving the Apple Crisp Cookie Cups on a rustic wooden tray lined with parchment paper and scatter fresh apple slices or cinnamon sticks around for an inviting display. You could also serve them mini—with bite-sized spoons for easy sharing that encourages everyone to dive in happily.
Make Ahead and Storage
Storing Leftovers
Leftover Apple Crisp Cookie Cups keep well in an airtight container at room temperature for up to two days. If you love them chilled, store in the refrigerator for up to four days, but bring them to room temperature before serving for the best texture.
Freezing
You can freeze the cookie cups without the filling for up to three months. Wrap them tightly in plastic wrap and store in a freezer-safe container. When ready, thaw overnight in the fridge and then bake or fill with freshly warmed apple mixture for a quick, homemade treat anytime.
Reheating
To reheat, place filled Apple Crisp Cookie Cups on a baking sheet and warm in a 300°F oven for about 8-10 minutes until just heated through. Avoid microwave reheating if possible, as it can make the cookie cups soggy instead of crisp.
FAQs
Can I use other types of apples for Apple Crisp Cookie Cups?
Absolutely! While Granny Smith apples are preferred for their tartness and firmness, you can also use Fuji, Honeycrisp, or Braeburn apples. Just be mindful that sweeter apples will make the filling less tangy.
Is it possible to make the cookie dough from scratch?
Yes! If you enjoy baking from scratch, a classic sugar cookie dough recipe works wonderfully. The key is to keep the dough slightly firm so it can hold its shape in the muffin tin during baking.
Can I prepare the apple filling ahead of time?
Definitely. The apple filling can be cooked and cooled up to a day before assembling your cookie cups, which makes this dessert a great option for planning ahead.
How do I prevent the cookie cups from sticking to the muffin tin?
Make sure to generously grease your muffin pan with butter or a high-quality non-stick baking spray, paying special attention to the sides and corners to ensure easy removal.
Can these be made gluten-free?
Yes, by substituting the sugar cookie dough with a gluten-free version, you can enjoy Apple Crisp Cookie Cups without gluten. Ensure your other ingredients don’t contain hidden gluten as well.
Final Thoughts
Whether you’re looking to impress guests, treat your family, or just enjoy a cozy moment with a sweet treat, these Apple Crisp Cookie Cups make baking fun and rewarding. They blend nostalgic fall flavors with the perfect cookie cup crunch, creating a dessert that’s both familiar and delightfully new. I can’t wait for you to try this recipe and enjoy these little cups of happiness just as much as I do!
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Apple Crisp Cookie Cups Recipe
- Total Time: 30 minutes
- Yield: 12 cookie cups
- Diet: Vegetarian
Description
These Apple Crisp Cookie Cups combine the warm, comforting flavors of apple crisp with the fun, handheld convenience of a cookie cup. Made with spiced apple filling and a buttery sugar cookie crust, they are perfect as a dessert or an indulgent snack.
Ingredients
Apple Filling
- 5 medium Granny Smith apples, peeled and diced into ¼ inch pieces
- 1 teaspoon cinnamon
- ¼ cup white granulated sugar
- ¼ cup brown sugar
- ¼ teaspoon nutmeg
- 1 tablespoon cornstarch
- 2 tablespoons butter
- ½ cup water
Cookie Cups
- 16.5 ounces refrigerated sugar cookie dough
- Butter or non-stick cooking spray (to grease muffin pan)
Instructions
- Prepare Apples: Peel and dice the apples into quarter-inch pieces. In a large mixing bowl, toss the apples with cinnamon, nutmeg, cornstarch, brown sugar, and white sugar until evenly coated.
- Cook Apple Mixture: Heat a large skillet over medium heat and melt the butter. Add the apple mixture and cook for 2-3 minutes until the apples begin to soften.
- Add Water and Simmer: Pour in the water and continue cooking over medium heat for about 10 minutes, stirring frequently, until the apples caramelize and the liquid thickens. Remove from heat and set aside.
- Preheat Oven and Prepare Muffin Pan: Preheat your oven to 350°F (175°C). Grease a muffin tin with butter or cooking spray to prevent sticking.
- Form Cookie Cups: Scoop about 1 ½ tablespoons of cookie dough into each muffin cup. Press the dough evenly on the bottom and mold it up the sides reaching about three-quarters up the tin. The dough layer will be thin but will thicken upon baking.
- Bake Cookie Cups: Bake for 11-12 minutes or until the dough edges turn a light golden brown. Allow the cookie cups to cool in the pan for 10 minutes.
- Cool and Remove: Gently loosen cookie cups using a spatula or butter knife and transfer them to a wire cooling rack. Let them cool completely for about 20 minutes.
- Fill and Serve: Spoon the prepared apple filling into each cookie cup. Serve the cups cold or warm according to preference and enjoy!
Notes
- Use Granny Smith apples for a tart and firm filling that holds up well during cooking.
- Make sure to grease the muffin pan well to easily remove the cookie cups after baking.
- Cookie dough can be refrigerated dough from the store or homemade sugar cookie dough.
- The cookie cups can be served warm or cold depending on your preference.
- Leftover apple filling can be refrigerated and used within 3 days.
- Prep Time: 15 minutes
- Cook Time: 15 minutes
- Category: Dessert
- Method: Baking and stovetop cooking
- Cuisine: American
Nutrition
- Serving Size: 1 cookie cup
- Calories: 220
- Sugar: 18g
- Sodium: 120mg
- Fat: 8g
- Saturated Fat: 4.5g
- Unsaturated Fat: 2.5g
- Trans Fat: 0g
- Carbohydrates: 34g
- Fiber: 2g
- Protein: 2g
- Cholesterol: 20mg